Analysis of molecular dynamics simulations
Jun 3, 2019 · Analysis with BIO3D We’ll carry out some basic analysis by calculating RMSD, RMSF and PCA. The tools use the Bio3D package, developed by the Grant lab. RMSD RMSD, or root-mean …
High Throughput Molecular Dynamics and Analysis
May 20, 2020 · RMSD analysis - protein RMSF analysis PCA analysis Hydrogen bond analysis Optional: Automating high throughput calculations Conclusion Glossary and abbreviations Background What is …
Hands-on: Protein-ligand docking / Protein-ligand docking ...
Oct 19, 2019 · Cheminformatics is the use of computational techniques and information about molecules to solve problems in chemistry. This involves a number of steps: retrieving data on chemical …
Galaxy Training!
Collection of tutorials developed and maintained by the worldwide Galaxy community
Running molecular dynamics simulations using NAMD
Jun 3, 2019 · This tool runs classical molecular dynamics simulations in NAMD using an NPT ensemble. User can run the simulation in small time intervals. The coordinates, velocities and the extended …
Simple Analysis / Analysis of molecular dynamics simulations ...
Oct 3, 2020 · Modelling, simulation and analysis of biomolecular systems
training.galaxyproject.org
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Galaxy Training Network
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Running molecular dynamics simulations using GROMACS
Jun 3, 2019 · Molecular dynamics (MD) is a method to simulate molecular motion by iterative application of Newton’s laws of motion. It is often applied to large biomolecules such as proteins or nucleic …
Workflow constructed from history 'Hsp90-MDAnalysis'
Jul 21, 2020 · Modelling, simulation and analysis of biomolecular systems